Susanti D, Johnson EF, Rodriguez JR, et al. Complete Genome Sequence of Desulfurococcus fermentans, a Hyperthermophilic Cellulolytic Crenarchaeon Isolated from a Freshwater Hot Spring in Kamchatka, Russia. J Bacteriol. 2012;194:5703–5704.  http://www.ncbi.nlm.nih.gov/pubmed/23012283

Susanti D, Mukhopadhyay B. An intertwined evolutionary history of methanogenic archaea and sulfate reduction. PLoS One. 2012;7:e45313.  http://www.ncbi.nlm.nih.gov/pubmed/23028926


Dharmarajan L, Kraszewski JL, Mukhopadhyay B, Dunten PW. Structure of an archaeal-type phosphoenolpyruvate carboxylase sensitive to inhibition by aspartate. Proteins. 2011;79:1820–1829.  http://www.ncbi.nlm.nih.gov/pubmed/21491491


Cho IM, Lai LB, Susanti D, Mukhopadhyay B, Gopalan V. Ribosomal protein L7Ae is a subunit of archaeal RNase P. Proc Natl Acad Sci U S A. 2010;107:14573–14578.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=20675586


Anderson I, Ulrich LE, Lupa B, et al. Genomic characterization of methanomicrobiales reveals three classes of methanogens. PLoS One. 2009;4:e5797.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=19495416

Anderson IJ, Dharmarajan L, Rodriguez J, et al. The complete genome sequence of Staphylothermus marinus reveals differences in sulfur metabolism among heterotrophic Crenarchaeota. BMC Genomics. 2009;10:145.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=19341479

Case CL, Rodriguez J, Mukhopadhyay B. Characterization of a NADH oxidase of the flavin-Dependent disulfide reductase family from Methanocaldococcus jannaschii. Microbiology. 2009;155:69–79.  

Dharmarajan L, Kraszewski JL, Mukhopadhyay B, Dunten PW. Expression, purification and crystallization of an archaeal-type phosphoenolpyruvate carboxylase. Acta Crystallogr Sect F Struct Biol Cryst Commun. 2009;65:1193–1196.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=19923749

Kim KH, Willger SD, Park SW, et al. TmpL, a transmembrane protein required for intracellular redox homeostasis and virulence in a plant and an animal fungal pathogen. PLoS Pathog. 2009;5:e1000653.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=19893627

Purwantini E, Mukhopadhyay B. Conversion of NO2 to NO by reduced coenzyme F420 protects mycobacteria from nitrosative damage. Proc Natl Acad Sci U S A. 2009;106(15):6333–6338.  http://dx.doi.org/10.1073%2Fpnas.0812883106


Anderson I, Rodriguez J, Susanti D, et al. Genome sequence of Thermofilum pendens reveals an exceptional loss of biosynthetic pathways without genome reduction. J Bacteriol. 2008;190:2957–2965.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=18263724

Dharmarajan L, Case CL, Dunten P, Mukhopadhyay B. Tyr235 of human cytosolic phosphoenolpyruvate carboxykinase influences catalysis through an anion-quadrupole interaction with phosphoenolpyruvate carboxylate. Febs J. 2008;275:5810–5819.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=19021757

Johnson EF, Mukhopadhyay B. Coenzyme F420-dependent sulfite reductase-enabled sulfite detoxification and use of sulfite as a sole sulfur source by Methanococcus maripaludis. Appl Environ Microbiol. 2008;74:3591–3595.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=18378657


Case CL, Mukhopadhyay B. Kinetic characterization of recombinant human cytosolic phosphoenolpyruvate carboxykinase with and without a His10-tag. Biochimica et Biophysica Acta. 2007;(in press).  

Johnson EF, Mukhopadhyay B. A novel coenzyme F420-dependent sulfite reductase and a small size sulfite reductase in methanogenic archaea. In: Dahl C, Friedrich CG, eds. Proceedings of the International Symposium on Microbial Sulfur Metabolism. New York, N.Y.: Springer,; 2007.  

Staples CR, Lahiri S, Raymond J, Von Herbulis L, Mukhophadhyay B, Blankenship RE. The Expression and Association of Group IV Nitrogenase NifD and NifH Homologs in the Non-Nitrogen Fixing Archaeon Methanocaldococcus jannaschii. J Bacteriol. 2007.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=17660283


Case CL, Concar EM, Boswell KL, Mukhopadhyay B. Roles of Asp75, Asp78, and Glu83 of GTP-dependent phosphoenolpyruvate carboxykinase from Mycobacterium smegmatis. J Biol Chem. 2006;281:39262–39272.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=17015450

Lai H, Kraszewski JL, Purwantini E, Mukhopadhyay B. Identification of pyruvate carboxylase genes in Pseudomonas aeruginosa PAO1 and development of a P. aeruginosa-based overexpression system for alpha4- and alpha4beta4-type pyruvate carboxylases. Appl Environ Microbiol. 2006;72:7785–7792.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=16997990

Seleem MN, Ali M, Boyle SM, et al. Establishment of a gene expression system in Ochrobactrum anthropi. Appl Environ Microbiol. 2006;72:6833–6836.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=17021239


Guss AM, Mukhopadhyay B, Zhang JK, Metcalf WW. Genetic analysis of mch mutants in two Methanosarcina species demonstrates multiple roles for the methanopterin-dependent C-1 oxidation/reduction pathway and differences in H2 metabolism between closely related species. Mol Microbiol. 2005;55:1671–1680.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15752192

Johnson EF, Mukhopadhyay B. A new type of sulfite reductase, a novel coenzyme F420-dependent enzyme, from the methanarchaeon Methanocaldococcus jannaschii. J Biol Chem. 2005;280:38776–38786.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=16048999


Patel HM, Kraszewski JL, Mukhopadhyay B. The phosphoenolpyruvate carboxylase from Methanothermobacter thermautotrophicus has a novel structure. J Bacteriol. 2004;186:5129–5137.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15262949

Patrie SM, Charlebois JP, Whipple D, et al. Construction of a hybrid quadrupole/Fourier transform ion cyclotron resonance mass spectrometer for versatile MS/MS above 10 kDa. J Am Soc Mass Spectrom. 2004;15:1099–1108.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15234368


McInerney T, Johnson EJ, Mukhopadhyay B, Borthwick A. Analysing 2-D gels at High Throughput, Data mining with Progenesis Discovery Informatics Tool. Genetic Engineering News. 2003;23:31–32,36.  


Galagan JE, Nusbaum C, Roy A, et al. The genome of M. acetivorans reveals extensive metabolic and physiological diversity. Genome Res. 2002;12:532–542.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=11932238


Fabrega C, Farrow MA, Mukhopadhyay B, de Crecy-Lagard V, Ortiz AR, Schimmel P. An aminoacyl tRNA synthetase whose sequence fits into neither of the two known classes. Nature. 2001;411:110–114.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=11333988

Mukhopadhyay B, Concar EM, Wolfe RS. A GTP-dependent vertebrate-type phosphoenolpyruvate carboxykinase from Mycobacterium smegmatis. J Biol Chem. 2001;276:16137–16145.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=11278451

Mukhopadhyay B, Purwantini E, Kreder CL, Wolfe RS. Oxaloacetate synthesis in the methanarchaeon Methanosarcina barkeri: pyruvate carboxylase genes and a putative Escherichia coli-type bifunctional biotin protein ligase gene (bpl/birA) exhibit a unique organization. J Bacteriol. 2001;183:3804–3810.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=11371547


Mukhopadhyay B, Johnson EF, Wolfe RS. A novel pH2 control on the expression of flagella in the hyperthermophilic strictly hydrogenotrophic methanarchaeaon Methanococcus jannaschii. Proc Natl Acad Sci U S A. 2000;97:11522–11527.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=11027352

Mukhopadhyay B, Patel VJ, Wolfe RS. A stable archaeal pyruvate carboxylase from the hyperthermophile Methanococcus jannaschii. Arch Microbiol. 2000;174:406–414.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=11195096

Mukhopadhyay B, Purwantini E. Pyruvate carboxylase from Mycobacterium smegmatis: stabilization, rapid purification, molecular and biochemical characterization and regulation of the cellular level. Biochim Biophys Acta. 2000;1475:191–206.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=10913817

(not specified)

Mukhopadhyay B.